| East |
| Week 1 |
| 9/10 | IBM BigBlue | Kajima Deers | 14:45 |
| 9/11 | Asahi Beer Silver Star | All-Mitsubishi Lions | 19:14 |
| 9/13 | Penta-Ocean Construction Pirates | Gakusei-Engokai Rocbull | 17:20 |
| Week 2 |
| 9/23 | All-Mitsubishi Lions | Penta-Ocean Construction Pirates | 24:21 |
| 9/25 | Kajima Deers | Gakusei-Engokai Rocbull | 24:7 |
| 9/25 | IBM BigBlue | Asahi Beer Silver Star | 3:16 |
| Week 3 |
| 10/4 | Kajima Deers | All-Mitsubishi Lions | 20:0 |
| 10/5 | IBM BigBlue | Gakusei-Engokai Rocbull | 27:25 |
| 10/10 | Asahi Beer Silver Star | Penta-Ocean Construction Pirates | 21:7 |
| Week 4 |
| 10/23 | Asahi Beer Silver Star | Gakusei-Engokai Rocbull | 7:3 |
| 10/24 | Kajima Deers | Penta-Ocean Construction Pirates | 21:7 |
| 10/24 | All-Mitsubishi Lions | IBM BigBlue | 13:13 |
| Week 5 |
| 11/2 | Kajima Deers | Asahi Beer Silver Star | 20:0 |
| 11/7 | Penta-Ocean Construction Pirates | IBM BigBlue | 32:3 |
| 11/7 | All-Mitsubishi Lions | Gakusei-Engokai Rocbull | 16:16 |
| Team | W | L | T | PF | PA | Pts. |
| Kajima Deers | 5 | 0 | 0 | 130 | 28 | 10 |
| Asahi Beer Silver Star | 4 | 1 | 0 | 63 | 47 | 8 |
| All-Mitsubishi Lions | 1 | 2 | 2 | 67 | 89 | 4 |
| IBM BigBlue | 1 | 3 | 1 | 60 | 131 | 3 |
| Gakusei-Engokai Rocbull | 1 | 3 | 1 | 71 | 91 | 3 |
| Penta-Ocean Construction Pirates | 1 | 4 | 0 | 84 | 89 | 2 |
|
| Central |
| Week 1 |
| 9/12 | Onward Skylarks | Tokyo Gas Creators | 62:19 |
| 9/14 | Nissan Skyliners | Club Huskies | 31:3 |
| 9/15 | Obic Seagulls | Fujitsu Frontiers | 27:24 |
| Week 2 |
| 9/23 | Onward Skylarks | Nissan Skyliners | 55:14 |
| 9/23 | Obic Seagulls | Club Huskies | 77:3 |
| 9/25 | Fujitsu Frontiers | Tokyo Gas Creators | 35:10 |
| Week 3 |
| 10/6 | Onward Skylarks | Fujitsu Frontiers | 33:14 |
| 10/9 | Tokyo Gas Creators | Club Huskies | 24:21 |
| 10/11 | Obic Seagulls | Nissan Skyliners | 38:7 |
| Week 4 |
| 10/23 | Onward Skylarks | Club Huskies | 91:3 |
| 10/23 | Obic Seagulls | Tokyo Gas Creators | 55:0 |
| 10/24 | Fujitsu Frontiers | Nissan Skyliners | 22:24 |
| Week 5 |
| 11/1 | Onward Skylarks | Obic Seagulls | 17:6 |
| 11/6 | Fujitsu Frontiers | Club Huskies | 80:14 |
| 11/6 | Nissan Skyliners | Tokyo Gas Creators | 66:6 |
| Team | W | L | T | PF | PA | Pts. |
| Onward Skylarks | 5 | 0 | 0 | 258 | 56 | 10 |
| Obic Seagulls | 4 | 1 | 0 | 203 | 51 | 8 |
| Nissan Skyliners | 3 | 2 | 0 | 142 | 124 | 6 |
| Fujitsu Frontiers | 2 | 3 | 0 | 175 | 108 | 4 |
| Tokyo Gas Creators | 1 | 4 | 0 | 59 | 239 | 2 |
| Club Huskies | 0 | 5 | 0 | 44 | 303 | 0 |
|
| West |
| Week 1 |
| 9/12 | Nagai Energering Marvies | Matsushita Denko Impulse | 0:45 |
| 9/12 | Asahi Soft Drinks Challengers | Finies Football Club | 27:19 |
| 9/12 | As One Black Eagles | Hankyu Bruins | 37:0 |
| Week 2 |
| 9/26 | Matsushita Denko Impulse | Hankyu Bruins | 68:0 |
| 9/26 | Asahi Soft Drinks Challengers | Nagai Energering Marvies | 14:6 |
| 9/26 | As One Black Eagles | Finies Football Club | 37:14 |
| Week 3 |
| 10/9 | Matsushita Denko Impulse | Finies Football Club | 23:0 |
| 10/9 | Asahi Soft Drinks Challengers | As One Black Eagles | 36:7 |
| 10/9 | Nagai Energering Marvies | Hankyu Bruins | 23:0 |
| Week 4 |
| 10/23 | Matsushita Denko Impulse | As One Black Eagles | 38:0 |
| 10/24 | Asahi Soft Drinks Challengers | Hankyu Bruins | 35:0 |
| 10/24 | Nagai Energering Marvies | Finies Football Club | 13:10 |
| Week 5 |
| 11/6 | As One Black Eagles | Nagai Energering Marvies | 12:7 |
| 11/6 | Matsushita Denko Impulse | Asahi Soft Drinks Challengers | 20:19 |
| 11/6 | Hankyu Bruins | Finies Football Club | 6:31 |
| Team | W | L | T | PF | PA | Pts. |
| Matsushita Denko Impulse | 5 | 0 | 0 | 194 | 19 | 10 |
| Asahi Soft Drinks Challengers | 4 | 1 | 0 | 131 | 52 | 8 |
| As One Black Eagles | 3 | 2 | 0 | 93 | 95 | 6 |
| Nagai Energering Marvies | 2 | 3 | 0 | 49 | 81 | 4 |
| Finies Football Club | 1 | 4 | 0 | 74 | 106 | 2 |
| Hankyu Bruins | 0 | 5 | 0 | 6 | 194 | 0 |
|
| Final 6 |
| Wild Card |
| 11/21 | Asahi Soft Drinks Challengers | Asahi Beer Silver Star | 7:10 |
| 11/21 | Kajima Deers | Obic Seagulls | 3:10 |
| Semifinals |
| 12/4 | Onward Skylarks | Asahi Beer Silver Star | ot 10:13 |
| 12/5 | Matsushita Denko Impulse | Obic Seagulls | 10:7 |
| Japan X Bowl |
| 12/18 | Matsushita Denko Impulse | Asahi Beer Silver Star | 15:6 |
| Rice Bowl |
| 1/3 | Matsushita Denko Impulse | Ritsumeikan University Panthers | 26:7 |
|
| Relegation |
| 12/4 | Hankyu Bruins | Iwatani Sidewinders | 15:24 |
| 12/11 | Penta-Ocean Construction Pirates | Tokyo MPD Eagles | 60:0 |
| 12/11 | Club Huskies | Renesas Hurricanes | 33:41 |
|